Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSNQASHLDNFMNAKNPKSFFDNKGNTKFIAITSGKGGVGKSNISANLAYSLYKKGYKVGVFDADIGLANLDVIFGV--KTHKNILHALKGEAKLQEII--------------------CEIEPGLCLIP-GDSGEEILKYISGAEALDRFVDEEGVLSSLDYIVIDTGAGIGATTQAFLNASDCVVIVTTPDPSAITDAYACIKINSKNK-DELFLIANMVAQPKEGRATYERLFKVAKNNIASLELHYLGAIENSSLLKRYVRERKILRKIAPNDLFSQSIDQIASLLVSKLETGTLEIPKEGLKSFFKRLLKYLG |
3KJH Chain:A ((1-254)) | ----------------------------MKLAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD-SCLGQTLGLSIEEAYAITPLIEMKDEIREKTGDGGLLILNPKVDGDLDKYGRYIDDKIFLIRMGEIKKGGSQCYCRENSFLGSVVSALFLDKKEAVVMDMGAGIEHLTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRNIKEEKLIKKHL-----------------------------PEDKILGIIPYNELFIELSLKGEEIWQST------NPAFVNLHDIYQKLRLEVG |
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General information:
TITO was launched using:
| RESULT:
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Template: 3KJH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -119084 for 1844 contacts (-64.6/contact) +
2D Compatibility (PS) -24337 + (NN) -4377 + (LL) 3752
1D Compatibility (HY) -8800 + (ID) 2600
Total energy: -155446.0 ( -84.30 by residue)
QMean score : 0.412
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