Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFLDHEKRRQLLNERHSCKMFDSHYEFSSTELEEIAEIARLSPSSYNTQPWHFVMVTNKDLKKQIAA----HSYFNEEMIKSASALMVVCSLKPSELLPTSHYMQNLY-----PESYKVRVIPSFAQMLGVRFNHSMQKLESYILEQCYIAVGQICMGVSLMGLDSCIIGGFDP--LKVGEILEERINKPKIVCLIALGKR-----VAEASKKSRKSKVDAITWL
1VFR Chain:A ((2-218))
-----THPIIHDLENRYTSKKYDPSKKVSQEDLAVLLEALRLSASSINSQPWKFIVIESDAAKQRMHDSFANMHQFNQPHIKACSHVILFANKLSYTRDDYDVVLSKAVADKRITEEQKEAAFASF-KFVELN-CDENGEHKAWTKPQAYLALGNALHTLARLNIDSTTMEGI--DPELLSEIFADELKGYECHVALAIGYHHPSEDYNASLPKSRKAFEDVITIL
General information:
TITO was launched using:
RESULT:
Template:
1VFR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112980 for 1382 contacts (-81.8/contact) +
2D Compatibility (PS) -21407 + (NN) -5586 + (LL) 564
1D Compatibility (HY) -7600 + (ID) 2300
Total energy: -149309.0 ( -108.04 by residue)
QMean score : 0.423
(partial model without unconserved sides chains):
PDB file :
Tito_1VFR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VFR-query.scw
PDB file :
Tito_Scwrl_1VFR.pdb
: