Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVIVALGVLAFANVLMATDVKALVKGCAACHGVKFEKKALGKSKIVNMMSEKEIEEDLMAFKSGANKN---PVMTAQAKKLSDEDIKALAKYIPTLK---
1CNO Chain:A ((1-86))
---------------AGDIEAGKAKAAVCAACHGQNGISQVPIYPNLAGQ-KEQYLVAALKAYKAGQRQGGQAPVMQGQATALSDADIANLAAYYASNPAAA
General information:
TITO was launched using:
RESULT:
Template:
1CNO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24494 for 550 contacts (-44.5/contact) +
2D Compatibility (PS) -8472 + (NN) -1691 + (LL) 1988
1D Compatibility (HY) 0 + (ID) 1300
Total energy: -33969.0 ( -61.76 by residue)
QMean score : 0.445
(partial model without unconserved sides chains):
PDB file :
Tito_1CNO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CNO-query.scw
PDB file :
Tito_Scwrl_1CNO.pdb
: