Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKRNVTAKKKVVKKNIARGVVYISATFNNTNITITDEMGNVICWSTAGGLGFKGSK-KSTPYAAQQAVESALSKAKEHGVKEVGIKVQGPGS--------GRETAIKSVGATEGVKVLWIKDITPLPHNGCRPPKRRRV
4CW7 Chain:H ((8-128))
------------IKKKEKWGIAHIYSSYNNTIIHITDITGAETISRWSGGMVVKADRDEPSPYAAMLAARRAAEEALEKGIVGVHIRVRAPGGSKSKTPGPGAQAAIRAL-ARAGLKIGRVEDVTPIPHDGTRPK-----
General information:
TITO was launched using:
RESULT:
Template:
4CW7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31933 for 829 contacts (-38.5/contact) +
2D Compatibility (PS) -12207 + (NN) -4245 + (LL) 1260
1D Compatibility (HY) -3600 + (ID) 2150
Total energy: -52875.0 ( -63.78 by residue)
QMean score : 0.657
(partial model without unconserved sides chains):
PDB file :
Tito_4CW7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CW7-query.scw
PDB file :
Tito_Scwrl_4CW7.pdb
: