Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MEIVESKLAGVKLVKPKVFGDHRGFFMESYNEKAFHEA-GIDMKFIQDNHSLSVEAGVLRGMHYQTNPKAQTKLIRVATGAIYDVVVDMRKGSPTYGEWEGYILSEANKHQLLVPQGFAHGFCTITENVNVLYKVDQLYSPENDAGIAYDDPDLNITWPTD-KLILSDKDTKHPRLKDAENNFVWENK
1DZR Chain:A ((1-183))
MMIVIKTAIPDVLILEPKVFGDERGFFFESYNQQTFEELIGRKVTFVQDNHSKSKK-NVLRGLHFQRGENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSEYAEFLYKATNYYSPSSEGSILWNDEAIGIEWPFSQLPELSAKDAAAPLLDQALLTE-----
General information:
TITO was launched using:
RESULT:
Template:
1DZR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71880 for 1394 contacts (-51.6/contact) +
2D Compatibility (PS) -19700 + (NN) -8004 + (LL) 580
1D Compatibility (HY) -16800 + (ID) 4200
Total energy: -120004.0 ( -86.09 by residue)
QMean score : 0.574
(partial model without unconserved sides chains):
PDB file :
Tito_1DZR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DZR-query.scw
PDB file :
Tito_Scwrl_1DZR.pdb
: