Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKENNFISLAKQAREFAYVPYSKFPVGAALVTKDDEVVLGCNIENASFGLTNCAERTAIFKAVSEGKRDFKQLVVVADTDGPVSPCGACRQVISEFCAPDMPVILTNLTGKTATVTVKELLPGAFTSEDML
3R2N Chain:A ((9-125))
-NWDTLQKAAVAARANSYAPYSNFPVGVAGFVNDGRLITGVNVENASYGLALCAECSMISALYATGGGRLVAVYCVDGNGDSLMPCGRCRQLLYEHGGPE--LKIMTPKG---VQTMAQLLPQ--------
General information:
TITO was launched using:
RESULT:
Template:
3R2N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65868 for 938 contacts (-70.2/contact) +
2D Compatibility (PS) -12773 + (NN) -3072 + (LL) 1248
1D Compatibility (HY) -7200 + (ID) 2000
Total energy: -89665.0 ( -95.59 by residue)
QMean score : 0.505
(partial model without unconserved sides chains):
PDB file :
Tito_3R2N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R2N-query.scw
PDB file :
Tito_Scwrl_3R2N.pdb
: