Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------VNDIIHDYLLKNIPK-SSPFFKELEAYAKENEVPIMEPDSL------YCLLQILDIQKPKRILELGTAIGYSALKMADKLPD--AEIITVERDEERYEQAIHNIQRYGASDRVKVLLTDAIEGAEEILAHGPFDAIFIDAAKAQYEKFFHIYTVS--LAENGVIYSDNVLFKGLALDMT-------PEKQRKLRVARKMRHFNDFLVTHPDFETTTIPLGDGLSISKRKKTGGVS
4YMH Chain:B ((2-236))
LGSILPFNEETADRVSAYCEKNSHGIPDALVEHWEWTRTRFPDADKMSSRLQGSWMIFTARDRKPKRILEIGCYSGYSALAWYEGTRDTKAEIVTLEYSPKMIAASREAFKKYGVGDRVKLIEGPAENTLKTL--EGEFDLIFVDANKDGYAGYVKTILDQGLLSANGIILCDNVFARGLTIGPDCAPWLNDHVRPYWNGCGQALDKFSAGLMEDPRIDVLLLPVFDGVTQIRWKDG----
General information:
TITO was launched using:
RESULT:
Template:
4YMH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85232 for 1651 contacts (-51.6/contact) +
2D Compatibility (PS) -23353 + (NN) -15258 + (LL) 140
1D Compatibility (HY) -10800 + (ID) 2850
Total energy: -137353.0 ( -83.19 by residue)
QMean score : 0.576
(partial model without unconserved sides chains):
PDB file :
Tito_4YMH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YMH-query.scw
PDB file :
Tito_Scwrl_4YMH.pdb
: