Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKHVFPTYKRFPIDLVNGTGTVVTDKNGKTYLDFTSGIAVCNLGHCPTNVAEAVQQQLGN-----IWHTSNLYECALQDSVAELIADGKERLVFFCNSGTESNEAALKLARKYTGKEKIITFEKSFHGRTFGSMSATGQAKIHQGFGELVPGFTYVPYNDIEAFRAEID-ENTAAVMLEVIQAEGGVIPANAAFLLEVQLLCKKMGALLIIDEVQTGLGRTGTLYGFEQIGLDPDIFTLAKGLGNGL-PIGAMVGKSDLIS-AFGPGS----HGSTFGGNKL----ALAAAKEILLTMKQTGFLEEVNAKADYFRNLLEANLEVLDNVSDIRGGGFLIGIELENA-------AEPVITELR-------------------------DKGLLILTAGTN-VLRILPPLTVSYAEIDQAIYLLKSVLENQLIGSEEG |
| 4PPM Chain:A ((421-846)) | ----------------SAAGTQLYDDAGEAFLDMVAGYGCLNLGHNPQPVVNALKNYLDAQGPNFIQYISIPEQTAKLAEVLCRLAPGNMGRVFFSNSGTEAVEAAMKIAKASTGKPGIAYLRNSYHGKTLGALSITGRDKHRRYFTPLLDAMVEVPFGDLAALREALNREDVGALMIEPIQGEGGVHIPPAGYLQAVQQLCRETGVLLMVDEVQTGLGRTGKLFACEWDGIEPDVLMLSKSLSGGLIPIGATLCRADLWQKAYGTADRFLVHSSTYGGGNLASVVALSALREI-LAQDLVGHAERMGA---YFKQALSEIAARYPFVSEVRGRGLMLGIQFDQAHTTWKFLPDPVQAHLRAAMDRMEQALGEMFCMKFVTKLCQDHKILTFITANSSTVIRIQPPLIISKAEIDRFVGAFATVCE--------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4PPM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -183408 for 3075 contacts (-59.6/contact) +
2D Compatibility (PS) -39539 + (NN) -24334 + (LL) 1860
1D Compatibility (HY) -24800 + (ID) 7450
Total energy: -277671.0 ( -90.30 by residue)
QMean score : 0.440
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