Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIIFVWAQDRAGNIGKDNKMPWHLPGDLQFFKKTTTGKTLVMGRKTYESLGKALPNRKTIVLTRDQGLKLDDAEILHSKEAVLALAETGEPIYIVGGAEIYRLFMDVADQLIVTKIDAEFEADTAFPEVDWENFSEVAKEFHEKDEKNKYNYTFYTYERN
3JWK Chain:B ((9-166))
-VSFMVAMDENRVIGKDNNLPWRLPSELQYVKKTTMGHPLIMGRKNYEAIGRPLPGRRNIIVTRNEGYHVEGCEVAHSVEEVFELCKNEEEIFIFGGAQIFDLFLPYVDKLYITKIHHAFEGDTFFPEMDMTNWKEVFVEKGLTDEKNPYTYYYHVYEK-
General information:
TITO was launched using:
RESULT:
Template:
3JWK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89433 for 1152 contacts (-77.6/contact) +
2D Compatibility (PS) -17038 + (NN) -5599 + (LL) 128
1D Compatibility (HY) -18400 + (ID) 3700
Total energy: -134042.0 ( -116.36 by residue)
QMean score : 0.634
(partial model without unconserved sides chains):
PDB file :
Tito_3JWK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JWK-query.scw
PDB file :
Tito_Scwrl_3JWK.pdb
: