Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNPFLKNKTVLITGASNGLGAEIARQVAMSGGNVIITARSTKKLIELQKDIHDKFSVEATYFTLDMTDFEQVKQ-VSAEINASYQIDVLVNCAGFGLFENAIDIPFETIEKMFDTNVLGLIQLTQLILPQMQARKAGHIINIASQAAKIATPKSTVYSATKYAVLGFSNALRLELMPDKINVTTINPGPIATNFFDVADKSSNYLETVGKLVLKPEKVAHKTVQIMGTKRREINLPFVMNIATRLYQVMPQVIEFFGKGAFLKK
2JAP Chain:C ((2-192))
-PSALQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDEL-TAAGAKVHVLELDVADRQGVDAAVASTVEALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHL-LRSKGTVVQMSSIAGRVNVRNAAVYQATKFGVNAFSETLRQEVTERGVRVVVIEPGTTDTEL----------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2JAP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -121078 for 1588 contacts (-76.2/contact) +
2D Compatibility (PS) -20740 + (NN) -8919 + (LL) 6172
1D Compatibility (HY) -11600 + (ID) 3250
Total energy: -159415.0 ( -100.39 by residue)
QMean score : 0.573
(partial model without unconserved sides chains):
PDB file :
Tito_2JAP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JAP-query.scw
PDB file :
Tito_Scwrl_2JAP.pdb
: