Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKLVATAPRVAVLVEYNDREVLEDEVKIKVQFASPKHGTEVVDFRGISPFIDEEFSPEWNLFVSRETNSARGIVFGEFQLGNMVVGEVVERGSKVTEYALGDIVCS---------------------------------YGPIMETVIVKAVD--NYKLRKLPKGANWKNAVCYD-PAQFAMSGVRDAHVRAGDYVVVVGLGAIGQIAIQLAKKAGASVVIGVDPLSHRREIAEKHGADATFDPITTDVGLEVKRLTGKLGADSIIETSGNAAALQAALRGIAYGGTISYVAFAKPFP-EGFNLG-REAHFNNAKIVFSRAASEPNPDYPRWDRKRIEETCWELLMNGYLDCSDIIDPVV-PFADSAESYMKYVDQQPDLSIKMGITL |
| 3FPC Chain:A ((1-351)) | MKGFAMLSIGKVGWIEKEKPAPGPFDAIVRPLAVAPCT-SDIHTVFEGAIG-----------------------ERHNMILGHEAVGEVVEVGSEVKDFKPGDRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKDGVFGEFFHVND-ADMN--LAHLPKEIPLEAAVMIPDMMTTGFHGAELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGVDKVVIAGGDVHTFAQAVKMIKPGSDIGNVNYLGEGDNIDIPRSEWGVGMGHKHIHGGLCPG----------GRLRMERLIDLVFYKRVDPSKLVTHVFRGFDNIEKAFML-MKDKPKDLIKPVVIL |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3FPC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -157777 for 2778 contacts (-56.8/contact) +
2D Compatibility (PS) -34456 + (NN) -13280 + (LL) 1444
1D Compatibility (HY) -11200 + (ID) 3400
Total energy: -218669.0 ( -78.71 by residue)
QMean score : 0.407
|
|
|