Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDVLRRLYKFAPEKKVYSYASLVLSAIATIFSVVPYFYLWKFLNELLVLKNLESANKYALWIFMFLVLQTLVYFLSLYCSHMFAFRVERNLKIEGLNNLLEASFSFFDTNPSGKTRQIIDDNASETHSILAHMQPDMVNAMVYPVILLVVSFLVSISFGIVMVVSLVLGVFLITKMFGNQNFLQKYMASNEDMSSEIVEYIRGVKVIKIFNIGIEKFRSLHKTIITSSELGYAYAISCRKWKVFYDSFFMGLCMVTIPYGVYLLNINTHLGEIISYTVFFTAFIELLYNAFNKVMFLGQNKAKAKNSIDKLEEIFNKMQVKKLDSGLSDEIQNFDIEFEKVSFKYEGNTPYVLKDLSFKLDSGKSYALIGSSGSGKSTIAKLISGFYDVDSGVIKIGGRDIKEYSRETIASSIAFVFQNAKLFKMSIYDNVRIGNPDATYEEIMQALEKARCNEILDKFELRENTMIGAEGVYLSGGETQRIVIARAILKNSPIIILDEASAAADPENEYELQMAFTQLIKNKTVIMIAHRLSAIKNMDEIIVVENGQIIERGSSKLLLEDKSSKYSYFMNMYIRANDWIMSNEV |
2FF7 Chain:A ((5-243)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQSD---------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2FF7.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -158050 for 1918 contacts (-82.4/contact) +
2D Compatibility (PS) -25695 + (NN) -3822 + (LL) 30660
1D Compatibility (HY) -22800 + (ID) 4500
Total energy: -184207.0 ( -96.04 by residue)
QMean score : 0.561
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