Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----------------MSYDKVSQAKSIIIGTKQTVKALKRGSVKEVVVAKDADPILT-SSVVSLAEDQGISVSMVE-SMKKLGKACGIEVGAAAVAIIL-------------------
1JJ2 Chain:F ((1-119))
PVYVDFDVPADLEDDALEALEVARDTGAVKKGTNETTKSIERGSAELVFVAEDVQPEEIVMHIPELADEKGVPFIFVEQ-QDDLGHAAGLEVGSAAAAVTDAGAAATVLEEIADKVEELR
General information:
TITO was launched using:
RESULT:
Template:
1JJ2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58724 for 608 contacts (-96.6/contact) +
2D Compatibility (PS) -8697 + (NN) -2674 + (LL) -28
1D Compatibility (HY) -800 + (ID) 1350
Total energy: -72273.0 ( -118.87 by residue)
QMean score : 0.644
(partial model without unconserved sides chains):
PDB file :
Tito_1JJ2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JJ2-query.scw
PDB file :
Tito_Scwrl_1JJ2.pdb
: