Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSASEFSRAELAAAFEKFEKTVARAAATRDWDCWVQHYTPDVEYIEHAAGIMRGRQRVRAWIQETMTTFPGSHMVAFPSLWSVIDESTGRIICELDNPMLDPGDGSVISATNISIITYAGNGQWCRQEDIYNPLRFLRAAMKWCRKAQELGTLDEDAARWMRRHGGP
2IMJ Chain:A ((12-136))
---PPFTRESAIEKIRLAEDG----WNSRDPERVSLAYTLDTQWRNRA-EFAHNREEAKAFLTRKWAKELD---YRLIKELWAFTDN--RIAVRYAYEWHDD-SGNWFRSYGNENWEFDEQGLMARRFACINDMPIKAQ----------------------------
General information:
TITO was launched using:
RESULT:
Template:
2IMJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49993 for 889 contacts (-56.2/contact) +
2D Compatibility (PS) -14013 + (NN) -7270 + (LL) 2836
1D Compatibility (HY) -3200 + (ID) 900
Total energy: -72540.0 ( -81.60 by residue)
QMean score : 0.346
(partial model without unconserved sides chains):
PDB file :
Tito_2IMJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2IMJ-query.scw
PDB file :
Tito_Scwrl_2IMJ.pdb
: