Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRKPLIAGNWKMNLNHYEAIALVQKI-AFSLPDKYYDRVDVAVIPPFTDLRSVQTLVDGDKLRLTYGAQDLSPHDSGAYTGDVSGAFLAKLGCSYVVVGHSERRTYHNEDDALVAAKAATALKHGLTPIVCIGEHLDVREAGNHVAHNIEQLRGSLAGLLAE--QIGSVVIAYEPVWAIGTGRVASAADAQEVCAAIRKELASLASPRIADTVRVLYGGSVNAKNVGDIVAQDDVDGGLVGGASLDGEHFATLAAIAAGGPLP
4MKN Chain:A ((18-266))
-SAKFFVGGNWKCNGSVANVAKLVDELNAGTIPRG----VDVVVAPPFIYIDYVMQHLDRDKYQLS--AQNAWIGGNGAFTGEVSAEQLTDFGVPWVILGHSERRSLFGESNEVVAKKTSHALAAGLGVIACIGETLEQRNSGSV----FKVLDAQMDALVDEVKDWTKVVLAYEPVWAIGTGVVASPEQAQEVHAYLRQYCAKKLGAAVADKLRIIYGGSVSDTNCKDLSKQEDIDGFLVGGASLKGAAFVTIC--NAAGP--
General information:
TITO was launched using:
RESULT:
Template:
4MKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -151856 for 2067 contacts (-73.5/contact) +
2D Compatibility (PS) -27916 + (NN) -19903 + (LL) 1020
1D Compatibility (HY) -21200 + (ID) 5450
Total energy: -225305.0 ( -109.00 by residue)
QMean score : 0.580
(partial model without unconserved sides chains):
PDB file :
Tito_4MKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MKN-query.scw
PDB file :
Tito_Scwrl_4MKN.pdb
: