Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTSGSLQFTVLRAVNPATDAQRESMLREPGFGKYHTDHMVSIDYAEGRGWHNARVIPYGPIELDPSAIVLHYAQEVFEGLKAYRWADGSIVSFRADANAARLRSSAR--RLAIPELPDAVFIESLRQLIAVDKAWVPGAGGEEALYLRPFIFATEPGLGVRPATQYR--YLLIASPAGAYF------KGGIAPVSVWVSTEYVRACPGGT-GAAKFGGNYAASLLAQAEAAENGCDQVVWLDAVERRYIEEMGGMNIFFVLGSGGSARLVTPELSGSLLPGITRDSLLQLAIDAGFAVEERRIDIDEWQKKAAAGEITEVFACGTAAVITPVARVRHGASEFRIADGQPGEVTMALRDTLTGIQRGTFADTHGWMARLG |
1IYD Chain:B ((10-308)) | -------------------------------------------------WFNGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGPVV-FRHREHMQRLHDSAKIYRFPVSQSIDEL-MEACRDVIRKNNL--------TSAYIRPLIFVGDVGMGVNPPAGYSTDVIIAAFPWGAYLGAEALEQGIDAMVSSWN-----RAAPNTIPTAAKAGGNYLSSLLVGSEARRHGYQEGIALDV--NGYISEGAGENLFEV----KDGVLFTPPFTSSALPGITRDAIIKLAKELGIEVREQVL------SRESLYLADEVFMSGTAAEITPVRSV----DGIQVGEGRCGPVTKRIQQAFFGLFTGETEDKWGWLDQVN |
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General information:
TITO was launched using:
| RESULT:
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Template: 1IYD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -187000 for 2378 contacts (-78.6/contact) +
2D Compatibility (PS) -30906 + (NN) -9585 + (LL) 3812
1D Compatibility (HY) -19200 + (ID) 5250
Total energy: -248129.0 ( -104.34 by residue)
QMean score : 0.340
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