Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | ----MVLGFWDIAVPIVGAPMAGGPSTPALAAAVSNAGGLGFV-AGGYLSADRLADDIAAARAATTGPIGANLFVPQPSVADWAQLEYYADELEEVAEYYHTEVGQPVYGDDDDWVRKLEVVADVRPEVVSFTFGAPPPDVVQRLSALGLLVSITVTSVYEAGVAIAAGADSLVVQGPAAGGHRGTFAPDMEPGTESLHQLLDRIGSAHDVPLVAAGGLGTAEDVAAVLRRGAIAAQVGTALLLADEAGTNAAHRAALKNPEFDATLVTRAFSGRYARGLANNFTRLLDHVAPLGYPEVH----QMTKPIRAAAVQADDPHGTNLWAGSAHRK-TRPGPAADIIASLTPDVCSA---------- |
2GJL Chain:A ((3-326)) | VFRTRFTETFGVEHPIMQGGMQW-VGRAEMAAAVANAGGLATLSALTQPSPEALAAEIARCRELTDRPFGVNLTLLPTQ-------------------------------KPVPYAEYRAAIIEAGIRVVETAGN-DPGEHIAEFRRHGVKVIHKCTAVRHALKAERLGVDAVSIDGFECAGHPGEDDI-------PGLVLLPAAANRLRVPIIASGGFADGRGLVAALALGADAINMGTRFLATRECPIHPAVKAAIRAADERSTDLIMRSLRNTARVARNAISQEVLAIEARGGAGYADIAALVSGQRGRQVYQQGDTDLGIWSAGMVQGLIDDEPACAELLRDIVEQARQLVRQRLEGMLA |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GJL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -163843 for 2721 contacts (-60.2/contact) +
2D Compatibility (PS) -33908 + (NN) -23019 + (LL) 2688
1D Compatibility (HY) -4000 + (ID) 3400
Total energy: -225482.0 ( -82.87 by residue)
QMean score : 0.509
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