Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNVLIVYAHPEPRSLNGALKDFAVARLEAAGHAVQVSDLYAMGWKA-VLDAGDSLEREASERFDPSATSLRAFENGWQSVDIAGEQDKLRWADTLILQFPLWWFSMPAILKGWIDRVYACGFAYGVGEHSDSHWGDRYGEGRMQGKRAMLVVTAGGWESHYAARGINGPMDDLLFPIHHGILHYPGFEVLPPFVVYRSGRIDAERFAALSEQLGRRLDDLQRAAPIPFRRQNGGDYLIPALTLRDELAPQRAGFAMHLAE
3OX2 Chain:B ((5-222))
-KVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDS--------GLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFCGFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPIPCTAHWHFGQ------------------------
General information:
TITO was launched using:
RESULT:
Template:
3OX2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -144744 for 1667 contacts (-86.8/contact) +
2D Compatibility (PS) -23421 + (NN) -9528 + (LL) 1644
1D Compatibility (HY) -17600 + (ID) 4600
Total energy: -198249.0 ( -118.93 by residue)
QMean score : 0.408
(partial model without unconserved sides chains):
PDB file :
Tito_3OX2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OX2-query.scw
PDB file :
Tito_Scwrl_3OX2.pdb
: