Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MHDEREGYLEILSRITTEEEFFSLVLEICGNYGFEFFSFGARAPFPLTAPKYHFLSNYPGEWKSRYISEDYTSIDPIVRHGLLEYTPLIWNGEDFQENRFFWEEALHHGIRHGWSIPVRGKYGLISMLSLVRSSESIAATEILEKESFLLWITSMLQATFGDLLAPRIVPESNVRLTARETEMLKWTAVGKTYGEIGLILSIDQRTVKFHIVNAMRKLNSSNKAEATMKAYAIGLLN
4LFU Chain:A ((5-240))
DFFSWRRTMLLRFQRMETAEEVYHEIELQAQQLEYDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSYYQAKNFLAIDPVLNPENFSQGHLMWNDDLFSEAQPLWEAARAHGLRRGVTQYLMLPNRALGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLNDEIV-MTPEMNFSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI-
General information:
TITO was launched using:
RESULT:
Template:
4LFU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -133593 for 1774 contacts (-75.3/contact) +
2D Compatibility (PS) -25179 + (NN) -12981 + (LL) 112
1D Compatibility (HY) -12800 + (ID) 3500
Total energy: -187941.0 ( -105.94 by residue)
QMean score : 0.394
(partial model without unconserved sides chains):
PDB file :
Tito_4LFU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LFU-query.scw
PDB file :
Tito_Scwrl_4LFU.pdb
: