Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MIPLIGQLYRNNNVVTSIHGRGLINRSVIAIMKAHRFARHRMADDAELSVHETFPILKAMSELKLGAASVDLGKMVAKFKAEGNGRSIEDFVKAELAEVVGKQNGDAREGTDVVLYGFGRIGRLLARILIEKTGGGDGLRLRAIVVRKGAENDLVKRASLLRRDSVHGPFDGTITIDEENNTLTANGNLIQVIYSNDPASIDYTQYGIKNALLVDNTGKWRDAEGLGQHLKCPGIDRVVLTAPGKGALKNIVHGINHTDIGADDKIISAASCTTNAIVPVLKAVNDQYGIVNGHVETVHSYTNDQNLIDNFH-KGSRRGRSAPLNMVITETGAATAAAKALPVLKGKLTGNAIRVPTPNVSMAILNLNLEKATTREEINEYLRQMAMHSDLQKQIDFVSSQEVVSTDFVGSRHAGVVDAEATIC-NDNRVVLYVWYDNEFGYSCQVVRVMEDMAGVNPPAFPR |
4O63 Chain:R ((7-329)) | --------------------------------------------------------------------------------------------------------------------GFGRIGRLVTRAAFN-SGKVD------IVAINDPFIDLHYMVYMFQYDSTHGKFNGTV--KAENGKLVINGKAITIFQERDPANIKWGDAGAE--YVVESTGVFTTMEKAGAHLKG-GAKRVIISAPSADA-PMFVMGVNHEKYNNTLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPAKYDEIKKVVKQ-ASEGPLKGILGYTEDQ-VVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMA--------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4O63.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -171945 for 2770 contacts (-62.1/contact) +
2D Compatibility (PS) -35211 + (NN) -16736 + (LL) 9892
1D Compatibility (HY) -20000 + (ID) 6950
Total energy: -240950.0 ( -86.99 by residue)
QMean score : 0.566
|
|
|