Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDKKTQTRARILGAATQALLERGAVEPSVGEVMGAAGLTVGGFYAHFQSKDALMLEAFEQLLGKRRELLGELDPGLSGK-ERRALAAAFYLSRKHRDAQVDAGCPLPATLAEVARLPEGFREVLSRHVEIMVTSLAESPEE-------TDVALADLVLMIGGLALARALGPGELSDRVLRAAKQAVN---------
1T56 Chain:A ((22-214))
----GDDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAENPADTDRENMWRTGINVFFETFGSHKAVTRAGQAARATSVEVAELWSTFMQKWIAYTAAVIDAERDRGAAPRTLPAHELATALNLMNERTLFASFAGEQPSVPEARVLDTLVHIWVTSIYGE
General information:
TITO was launched using:
RESULT:
Template:
1T56.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58967 for 1228 contacts (-48.0/contact) +
2D Compatibility (PS) -19404 + (NN) -12317 + (LL) 168
1D Compatibility (HY) -5200 + (ID) 1350
Total energy: -97070.0 ( -79.05 by residue)
QMean score : 0.425
(partial model without unconserved sides chains):
PDB file :
Tito_1T56.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1T56-query.scw
PDB file :
Tito_Scwrl_1T56.pdb
: