Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVILLGAPGAGKGTQARFITEKFGIPQISTGDMLRAAVKAGSPLGQQVKGVMDSGGLVSDDIIIALIKERITEADCAKGFLFDGFPRTIPQAEALKDA----GVTIDHVVEIAVDDEEIVSRIAGRRVHPASGRVYHTEHNPPKVAGKDDVTGEELIQREDDKEETVRHRLSVYHSQTKPLVDFYQKLSAAEGTPKYHSIAGVGSVEQITAKVLSALS
4JL8 Chain:A ((1-178))
MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKHGNV---IFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPP-------PGVKVIQREDDKPEVIKKRLEVYREQTAPLIEYYKK-------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4JL8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67716 for 1279 contacts (-52.9/contact) +
2D Compatibility (PS) -18915 + (NN) -7729 + (LL) 2424
1D Compatibility (HY) -18000 + (ID) 4450
Total energy: -114386.0 ( -89.43 by residue)
QMean score : 0.496
(partial model without unconserved sides chains):
PDB file :
Tito_4JL8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JL8-query.scw
PDB file :
Tito_Scwrl_4JL8.pdb
: