Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQLKDKVIIITGGCQGLGRAMGEYLAGKGARL-ALVDLNRERLDEAVAACKAAGGDARAYVCNVADEEQVTHMVAQVASDFGAINGLVNNAGILRDGLTIKVKDGQLSKMSLAQWQSVIDVNLTGVFLCTREVAAKMIELKNEGAIVNISSIS-RAGNMGQANYSAAKAGVAADTVVWAKELARYGIRVAGVAPGFIETEMTAGMKPEALEKMTAGIPLKRMGKPVEIAHSVAYIF--ENDYYTGRVLELDGGLRL
3VZP Chain:D ((15-256))
-----RIAYVTGGMGGIGTAICQRLAKDGFRVVAGCGPNSPRREKWLEQQKALGFDFIASEGNVADWDSTKTAFDKVKSEVGEVDVLINNAGITRDVV--------FRKMTRADWDAVIDTNLTSLFNVTKQVIDGMAD-RGWGRIVNISSVNGQKGQFGQTNYSTAKAGLHGFTMALAQEVATKGVTVNTVSPGYIATDMVKAIRQDVLDKIVATIPVKRLGLPEEIASICAWLSSEESGFSTGADFSLNGGLHM
General information:
TITO was launched using:
RESULT:
Template:
3VZP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129712 for 1981 contacts (-65.5/contact) +
2D Compatibility (PS) -25702 + (NN) -8227 + (LL) 1116
1D Compatibility (HY) -15600 + (ID) 4750
Total energy: -182875.0 ( -92.31 by residue)
QMean score : 0.493
(partial model without unconserved sides chains):
PDB file :
Tito_3VZP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VZP-query.scw
PDB file :
Tito_Scwrl_3VZP.pdb
: