Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSELNLTTDEARVSYGIGRQLGDQLRENPVPGMTLDAVLAGLSDAFAGIDSRVSGEALSASFQVIRERMQAEAQAKAEAAAGEGRAYLAENAKREGVTVLPSGLQFEVLSTGEGAK-PSREDTVRTHYHGTLIDGTVFDSSYQRGQPAEFPVGG--VIAGWVEALQLMNAGSKWRLHVPSELAYGGQA-VGSIPPHSVLVFDVELLEIL
1C9H Chain:A ((1-106))
------------------------------------------------------------------------------------------------------GVEIETISPGDGRTFPKKGQTCVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGFEEGAAQMSLGQRAKLTCTPDVAYGATGHPGVIPPNATLIFDVELLNL-
General information:
TITO was launched using:
RESULT:
Template:
1C9H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57761 for 735 contacts (-78.6/contact) +
2D Compatibility (PS) -11005 + (NN) -2098 + (LL) 7204
1D Compatibility (HY) -6000 + (ID) 2050
Total energy: -71710.0 ( -97.56 by residue)
QMean score : 0.564
(partial model without unconserved sides chains):
PDB file :
Tito_1C9H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1C9H-query.scw
PDB file :
Tito_Scwrl_1C9H.pdb
: