Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHSLQAKILDPRLGS-DFPLPQYATPGSAGLDLRAMLKEDSVLGPGQTLLIPTGLSIYIADPGLAALVLPRSGLGHKHGIVLGNLVGLIDSDYQGELMVSCWNRGESPFTIAVGERIAQLVLVPVV-QAHFELVEAFDESQRGAGGFGHSGSH
3F4F Chain:C ((27-163))
------KVLKIQLRSASATVPTKGSATAAGYDIYAS-QDITIPAMGQGM-VSTDIS-FTVPVGTYGRIAPRSGLAVKNGIQTG--AGVVDRDYTGEVKVVLFNHSQRDFAIKKGDRVAQLILEKIVDDAQIVVVDSLEESARGAGGFG-----
General information:
TITO was launched using:
RESULT:
Template:
3F4F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67425 for 881 contacts (-76.5/contact) +
2D Compatibility (PS) -14233 + (NN) -4702 + (LL) 1176
1D Compatibility (HY) -8000 + (ID) 2550
Total energy: -95734.0 ( -108.67 by residue)
QMean score : 0.312
(partial model without unconserved sides chains):
PDB file :
Tito_3F4F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3F4F-query.scw
PDB file :
Tito_Scwrl_3F4F.pdb
: