Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MYVSNCNPCAIHRKINY----PNTKLDFEQVNNITEFILLGLTQNAEAQKLLFAVFT-----LIYFLTMVDNLIIVVTITTSPALDSPVYFFLSFFSFIDGCSSSTMAPKMIFDLLTEKK--TISFSGCMTQLFVEHFF----GGVEIILLVVMAYDCYVAICKPLYYLITMNRQVC-----GLLVAMAWVGGFLHALI--QMLLIVWLPFCGPNVID--------HFICDLFPLLKLSCTDTHVFGLFV--AANSGLMCML-----------------------IFSILI--TSYVLILC-----SQRKALSTCAFHITVVVLFFV---PCILVYLRPMITFPIDKAVSVFYTVVT----------PMLNPLIYTLR-----------NTEVKNAMKQLWSQIIWGNNLCD |
| 4C0K Chain:A ((6-409)) | ELTSACKK-SLVRIFKICDIDGDNLLNDYELNLFQRRCFNTPLQPQILDEVKAVIQKNVPDGIYNDAVTLKGFLFLHCLFIQRGRNETTWAVLRRFGYND---QLEMCQEYLRPPLKIPPGSSTELSHRGQQFLIAVFERYDRDGDGALSPEEHKMLFSTCPAAPWSYSTDIRKSCPINETTGWVTLHGWLCRWTLMTLIDVVKTMEYLAYLGFNVHENDSQLAAIHVTRERRIDLAKRQSSRSVYKCHVIGPKGSGKTGMCRGFLVEDMHKLIGKEFKTNVVNCINSVQVYGQEKHLILRDIDVRHALDPLQPQEVNCDVACLVYDSSNPRSFEYVARIYIKYYAESKIPVMIVGTKCDMDERRQDYLMQPSEFCDKYKLLPPHLFSLKTNKKELYTKLATMAAFPH---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4C0K.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -376059 for 2174 contacts (-173.0/contact) +
2D Compatibility (PS) -33300 + (NN) -2540 + (LL) -12
1D Compatibility (HY) -4000 + (ID) 2300
Total energy: -418211.0 ( -192.37 by residue)
QMean score : 0.267
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