Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKQDYISYIRSKVGHETIFLTYSGGILTDGKGRVLLQLRADK---NSWGIIGGCMELGESSVDTLKREFFEETGLRVEPIRLLNVYTNFQDSYPNGDKAQTVGFIYEVSCPKPVNIEGFHNEETLQLDYFSKEDVKNITIVN----EQHQLILDEYFSQTFQMGR
2B0V Chain:A ((6-139))
-----------------KPNVTVAAVIEQ-DDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGIYHWTCAS----NGTTYLRFTFSGQVVSF-DPDRKLDTGIVRAAWFSIDEIRA--KQAMHRTPLVMQCIEDYHAGKRYPLD
General information:
TITO was launched using:
RESULT:
Template:
2B0V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43310 for 898 contacts (-48.2/contact) +
2D Compatibility (PS) -13350 + (NN) -3553 + (LL) 1212
1D Compatibility (HY) -1600 + (ID) 1050
Total energy: -61651.0 ( -68.65 by residue)
QMean score : 0.497
(partial model without unconserved sides chains):
PDB file :
Tito_2B0V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2B0V-query.scw
PDB file :
Tito_Scwrl_2B0V.pdb
: