Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKHPGDFGADAQGAMNKALELFRKDMASNYKELGFQG
2NRL Chain:A ((3-146))
----EADFDAVLKCWGPVEADYTTIGGLVLTRLFKEHPETQKLFPKFAGIAQADI-AGNAAVSAHGATVLKKLGELLKAKGSHAAILKPLANSHATKHKIPINNFKLISEVLVKVMQEK-A-GLDAGGQTALRNVMGIIIADLEANYKELGFS-
General information:
TITO was launched using:
RESULT:
Template:
2NRL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 77404 for 1073 contacts (72.1/contact) +
2D Compatibility (PS) -14880 + (NN) -2481 + (LL) 396
1D Compatibility (HY) 8800 + (ID) 550
Total energy: 68689.0 ( 64.02 by residue)
QMean score : -0.002
(partial model without unconserved sides chains):
PDB file :
Tito_2NRL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NRL-query.scw
PDB file :
Tito_Scwrl_2NRL.pdb
: