Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTR-QGVEDAFYTLVREIRQHKLRKLNPPDESGPGCMSCKCVLS
3KKQ Chain:A ((17-182))
-PTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ------------------------
General information:
TITO was launched using:
RESULT:
Template:
3KKQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89715 for 1319 contacts (-68.0/contact) +
2D Compatibility (PS) -18241 + (NN) -7394 + (LL) 740
1D Compatibility (HY) -19600 + (ID) 4800
Total energy: -139010.0 ( -105.39 by residue)
QMean score : 0.675
(partial model without unconserved sides chains):
PDB file :
Tito_3KKQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KKQ-query.scw
PDB file :
Tito_Scwrl_3KKQ.pdb
: