Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMYSKLLTLTTLLLPTALALPSLVERACDYTCGSNCYSSSDVSTAQAAGYQLHEDGETVGSNSYPHKYNNYEGFDFSVSSPYYEWPILSSGDVYSGGSPGADRVVFNENNQLAGVITHTGASGNNFVECT
1RDS Chain:A ((3-103))
---------------------------CEYTCGSTCYWSSDVSAAKAKGYSLYESGDTI--DDYPHEYHDYEGFDFPVSGTYYEYPIMSDYDVYTGGSPGADRVIFNGDDELAGVITHTGASGDDFVACS
General information:
TITO was launched using:
RESULT:
Template:
1RDS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46280 for 762 contacts (-60.7/contact) +
2D Compatibility (PS) -11371 + (NN) -7697 + (LL) 2656
1D Compatibility (HY) -12400 + (ID) 3400
Total energy: -78492.0 ( -103.01 by residue)
QMean score : 0.413
(partial model without unconserved sides chains):
PDB file :
Tito_1RDS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RDS-query.scw
PDB file :
Tito_Scwrl_1RDS.pdb
: