Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKISVLGSTGSIGKKTVDLLLKRKEEYQVEALSTC-SNFALLACQAKLLNARYVAISNKRFYKDLKESLLGTGIKVEVGTEGLMNVASLPVDLSVVAVVGIAGLEPVMHVIESGTKVIALANKESIVCGGKLLLKKTEEKNVQIVPIDSEHNAIFQVLQNGNKC-VEKIILTASGGSFLNYSLEQLRNVTVGQALSHPTWNMGKKISVDSATMMNKALEIIEAHNLFNISPNRIEAIVHPESIIHGIVIYKDGFNFAVLAEADMAIPISYALSWPER-SALSYKLDL-TKQKLTFQEPDHKRFPALKLSMEVLNSSSPHTNSIVLNAANEVAVDKFLKSRIDFLEIIKVVKLTVENFDSYT-DINSLSDIINIDLESRAIAKEIIKNKVLAYS |
2Y1D Chain:A ((23-397)) | --RVVVLGSTGSIGTQALQVIADNPDRFEVVGLAAGGAHLDTLLRQRAQTGVTNIAV----------D------IPYHGSDAATRLVEQTEADVVLNALVGALGLRPTLAALKTGAR-LALANKESLVAGGSLVLRAARPG--QIVPVDSEHSALAQCLRGGTPDEVAKLVLTASGGPFRGWSAADLEHVTPEQAG----------NTLNSASLVNKGLEVIETHLLFGIPYDRIDVVVHPQSIIHSMVTFIDGSTIAQASPPDMKLPISLALGWPRRVSGAAAACDFHTASSWEFEPLDTDVFPAVELARQAGVAGGCMT--AVYNAANEEAAAAFLAGRIGFPAIVGIIADVLHAADQWAVEPATVDDVLDAQRWARERAQRAVSGM----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2Y1D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -247122 for 3094 contacts (-79.9/contact) +
2D Compatibility (PS) -37308 + (NN) -12816 + (LL) 1844
1D Compatibility (HY) -19200 + (ID) 6250
Total energy: -320852.0 ( -103.70 by residue)
QMean score : 0.464
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