Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSFLIVANWKMNGTRSLFVNFIGKLNDKSNEITSKLVICPPFTSLP-GNIELNSNISIGAQNCHYKKSGSYTGEISAEMLKELGCTYVILGHSERTH---ETNGEIKLKSETAIESGLHPIICVGENLEDRESSKTKEVVEYQCKS---RLPIHGEYTVAYEPIWAIGTGHVPSNNAIAEVIEVIQSYTSKKHV----------IYGGSVSLENIENLSNILNLSGVLIGSASLDFDRFHKIVQQVEKAY
1SU5 Chain:A ((5-235))
--FFVGGNWKMNGDKKSLGELIHTLNGAKLSADTEVVCGAPSIYLDFARQKLDAKIGVAAQNCYKVPKGAFTGEISPAMIKDIGAAWVILGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGNPNTPQQAQEVHEKLRGWL-KSHVSDAVAQSTRIIYGGSVTGGNCKELASQHDVDGFLVGGASLKPEFVDIINAKH----
General information:
TITO was launched using:
RESULT:
Template:
1SU5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115017 for 1737 contacts (-66.2/contact) +
2D Compatibility (PS) -23162 + (NN) -8676 + (LL) 232
1D Compatibility (HY) -14000 + (ID) 4250
Total energy: -164873.0 ( -94.92 by residue)
QMean score : 0.421
(partial model without unconserved sides chains):
PDB file :
Tito_1SU5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SU5-query.scw
PDB file :
Tito_Scwrl_1SU5.pdb
: