Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKVHVFDHPLIQHKLSYIRDVNTGTKEFRELVDEVGMLMAYEVTRDLELQDVDIETPVTKMTAKRLAGKKLAIVPILRAGLGMTDGILSLVPAARVGHIGLYRDPETLKAVEYFAKLPQDITERQIIVVDPMLATGASAIEAITSLKKRGA--KNIRFMCLIAAPEGVEKMHEAHPDVDIYIAALDEKLNDKAYITPGLGDAGDRLFGTK
3DMP Chain:A ((7-213))
FPNLFILDHPLIQHKLTHMRDKDTSTRTFRELLREITLLMGYEITRNLPITTKRVETPLVEIDAPVIAGKKLAIVPVLRAGVGMSDGLLELIPSARVGHIGVYRADD-HRPVEYLVRLP-DLEDRIFILCDPMVATGYSAAHAIDVLKRRGVPGERLMFLALVAAPEGVQVFQDAHPDVKLYVASLDSHLDDHAYIVPGLGDAGDRLFG--
General information:
TITO was launched using:
RESULT:
Template:
3DMP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -179067 for 1637 contacts (-109.4/contact) +
2D Compatibility (PS) -21438 + (NN) -1400 + (LL) 288
1D Compatibility (HY) -25200 + (ID) 5700
Total energy: -232517.0 ( -142.04 by residue)
QMean score : 0.512
(partial model without unconserved sides chains):
PDB file :
Tito_3DMP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DMP-query.scw
PDB file :
Tito_Scwrl_3DMP.pdb
: