Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLFDYAPLSLAWREFLQSEFKKPYFLEIEKRYLEALKSPKTIFPKSSNLFCAFNLTPPYAVKIILLGQDPYHSTYLENEQELPVAMGLSFSVEKNAPIPPSLKNIFKELHANL-GVPVPCCGDLSAWAKRGMLLLNAILSVEKNQAASHKYIGWEAFSDQILIRLFETTTPLIVVLLGKVAQKKIALIPKNKHIIITAPHPSPL--SRGFLGSGVFTSVQKAYREVYRKDFDFSL----
1UUG Chain:A ((5-226))
----------LTWHDVLAEEKQQPYFLNTLQTVASERQSGVTIYPPQKDVFNAFRFTELGDVKVVILGQDPYHGP--------GQAHGLAFSVRPGIAIPPSLLNMYKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFTDKVISLINQHREGVVFLLWGSHAQKKGAIIDKQRHHVLKAPHPSPLSAHRGFFGCNHFVLANQWLEQRGETPIDWMPVLPA
General information:
TITO was launched using:
RESULT:
Template:
1UUG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -138193 for 1659 contacts (-83.3/contact) +
2D Compatibility (PS) -23242 + (NN) -13639 + (LL) 1544
1D Compatibility (HY) -16000 + (ID) 4250
Total energy: -193780.0 ( -116.81 by residue)
QMean score : 0.588
(partial model without unconserved sides chains):
PDB file :
Tito_1UUG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UUG-query.scw
PDB file :
Tito_Scwrl_1UUG.pdb
: