Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVAPSLLSADFMHLAKEIESV--SNADFLHVDVMDGHYVPNLTMGPVILENVTQMSQVPLDVHLMVENASFFVELFAPLNPQIISIHAENEK--HPHRVLQLIKSSGITPGIVLNPHTHEESIKYLLESVGLVLLMSVNPGFGGQKFLDLVLEKCLKVKELIKRYNPSCLLEVDGGVNDKNIFELQQAGVDVVVSGSYIFESKDRKLAIEGLQNVRQPLA
1TQJ Chain:A ((6-223))
-VVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNP----QSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNSKRP--
General information:
TITO was launched using:
RESULT:
Template:
1TQJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -170245 for 1786 contacts (-95.3/contact) +
2D Compatibility (PS) -22875 + (NN) -11275 + (LL) 144
1D Compatibility (HY) -19200 + (ID) 4350
Total energy: -227801.0 ( -127.55 by residue)
QMean score : 0.603
(partial model without unconserved sides chains):
PDB file :
Tito_1TQJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TQJ-query.scw
PDB file :
Tito_Scwrl_1TQJ.pdb
: