Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MPKRMKCFSQKWLVFFVTHWLLLASLSHAKMAFESNIDTKALEAFGVNASFLSQMPGALKKVNKEEEWKKLVKRFDVNYQFIPIIKNMLIGASVPQEFLFLAM-AESKFSSRAYSRKKAVGIWQFMPSTA-----KELGLKVNHYIDERRDPIKSTQAAIAYLKRLYK--------QTGEWYLVAMAYNYGLRKVQ--------NAIKAAGTSDIKVLLDEDKKYLP-KETREYIRSILSLALKFNSLDNLKDKEYLLNRGARVSLVGVPFKRHTSLVQVAKNLNLSLETLKSYNHQFRYNILPSKDPTYTIYIPYEKLALFKQRQLKQNKNAQANPKSPFITHVVLPKETLSSIAKRYQVSISSIQLANNLKDSNIFIHQRLIIPTNKKLLATREF |
| 2Y8P Chain:A ((19-208)) | ------------------------------------------------------------KHDYTNPPWNAKVPVQRAMQWMPISQKAGAAWGVDPQLITAIIAIESGGNPNAVSKSNAIGLMQLKASTSGRDVYRRMGWSGEPTTSELKNPERNISMGAAYLNILETGPLAGIEDPKVLQYALVVSYANGAGALLRTFSSDRKKAISKINDLDADEFLEHVARNHPAPQAPRYIYKLEQALDAMLEHHH--------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2Y8P.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -62531 for 1281 contacts (-48.8/contact) +
2D Compatibility (PS) -17954 + (NN) -9595 + (LL) 16200
1D Compatibility (HY) 0 + (ID) 1550
Total energy: -75430.0 ( -58.88 by residue)
QMean score : 0.440
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