Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTYKFPENFWWGSAASGPQTEGAADVDGRKPSIWDHWYKIEPGRFFNDVGPTNTSNFYYQYKEDIALMKQTGHNSFRTSIQWSRLIPDGIGEVNPKAVDFYNRVIDEMLANDVEPFMNLYHFDMPMSMQEKGGFESREVVDAYATFAKTCFELFGDRVKHWFTFNEPIVPVEAGYLYDMHYPNVVDFKRATQVAYHTTLAHALAVKEFHALEIPEGQIGIILNLTPSYPRS-QNPADLKAAHIADLIFNRSFLDPVTKGEFPTDLVEIIREHDALPEYTEEDLAIIKNNIIDILGVNYYQPRRVKAKEYAAHPDAPFMPEH-------------LFDNYEMPYRKMNPYRGWEIFERAIYDIAINLRDNYDNIP-FFISENGMGVEGESRYRNADGMIEDTYRIDFIKSHLKWLHKAIEEGANCHGYHLWTFMDCWSWANAYKNRYGLVEVDLDNDFKRTVKASGHWYKELAENNGFED |
| 3W53 Chain:A ((43-502)) | --FAWPKEFLWGSATAAAQIEGAGHSYGKEDSVWDAFARKE-GAIAGGENLEVAVDHYHRYREDVQLMRELGLDSYRFSTSWARVVPGGR-TVNPEGLDFYSRLVDELLENGILPWLTLYHWDLPQALEERGGWTNRETSYKFLEYAETVHEKLGDRVKHWTTFNEPLCSSLIGYAAGEHAPGRQEPQAALAAVHHQHLAHGLATARLR--ELGAEHIGITLNLTNAVPNNPGDPVDLEAARRVDALWNRMYLDPVLRGSYPEDLLEDVQGLGLAEVIEAGDLEII-SQPIDFLGVNHYHDDNVSGHPLPAGQPQPVVPTDSPKSSPFVGSEYVTFPARDLPRTAM----GWEVNPEGLRVLLNRLNQDYANLPSLYITENGASY---TDTVTEAGTVEDPEREEYILNHLDAVVRAIADGVDVRGYFVWSLLDNFEWAWGYAKRFGIIHVDYQTQV-RTIKNSGKAYAGLIAAN---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3W53.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -196741 for 3979 contacts (-49.4/contact) +
2D Compatibility (PS) -47699 + (NN) -25050 + (LL) 392
1D Compatibility (HY) -27200 + (ID) 8100
Total energy: -304398.0 ( -76.50 by residue)
QMean score : 0.492
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