Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VENTIVIKLGGVAS--DNLTEGFFRQITEWQAAN-KKIVLVHGGGHYITKMMEALAIPVETKNGLRVTNKATLEVTKMVLIGQVQPAITTAFQKRNISVIGLNASDTGLLEADRLSDTDLGLVGKITKVKTNLIEQLLSENIITVIAPLGINSEHDWLNVNADTAACEVASALHAEALYLLTDVPGVKNGS-EIIGEIATAEIEKLQSTGVIKGGMIPKLASAAFAAENGVGQVIITD-SLNNSGTKIKNKVAIG----- |
1GS5 Chain:A ((1-258)) | MMNPLIIKLGGVLLDSEEALERLFSALVNYRESHQRPLVIVHGGGCVVDELMKGLNLPVKKKNGLRVTPADQIDIITGALAGTANKTLLAWAKKHQIAAVGLFLGDGDSVKVTQ-LDEELGHVGLAQPGSPKLINSLLENGYLPVVSSIGVTDEGQLMNVNADQAATALAATLGA-DLILLSDVSGILDGKGQRIAEMTAAKAEQLIEQGIITDGMIVKVNAALDAARTLGRPVDIASWRHAEQLPALFNGMPMGTRILA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GS5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -149266 for 2121 contacts (-70.4/contact) +
2D Compatibility (PS) -27298 + (NN) -8910 + (LL) 280
1D Compatibility (HY) -19600 + (ID) 4000
Total energy: -208794.0 ( -98.44 by residue)
QMean score : 0.442
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