Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARYTGPSWKVSRRLGISLSGTGKE-------LERRPYAPGQHGPTQRKKISEYGLQQAEKQKLRHMYGLTERQFKNTFNKAGKLRGKHGENFMILLEQRLDNIVYRLGLARTRRAARQLVNHGHITVDGKRVDIPSYQVSVGQVISVREKSAKNSAIAESLEV--SSFVPEYVTFDAEKLTGSLNRLPERSELAAEINEAFIVEFYSR
2ZM6 Chain:D ((1-208))
-GRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLREKQKLRRIYGISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVEGMKGKFLRLPDREDLALPVNEQLVIEFYSR
General information:
TITO was launched using:
RESULT:
Template:
2ZM6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42858 for 1461 contacts (-29.3/contact) +
2D Compatibility (PS) -21131 + (NN) -9285 + (LL) 208
1D Compatibility (HY) -17200 + (ID) 5000
Total energy: -95266.0 ( -65.21 by residue)
QMean score : 0.449
(partial model without unconserved sides chains):
PDB file :
Tito_2ZM6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ZM6-query.scw
PDB file :
Tito_Scwrl_2ZM6.pdb
: