Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIIFVWAQDRAGNIGKDNKMPWHLPGDLQFFKKTTTGKTLVMGRKTYESLGKALPNRKTIVLTRDQGLKLDDAEILHSKEAVLALAETGEPIYIVGGAEIYRLFMDVADQLIVTKIDAEFEADTAFPEVDWENFSEVAKEFHEKDEKNKYNYTFYTYERN
3JWK Chain:A ((9-166))
-VSFMVAMDENRVIGKDNNLPWRLPSELQYVKKTTMGHPLIMGRKNYEAIGRPLPGRRNIIVTRNEGYHVEGCEVAHSVEEVFELCKNEEEIFIFGGAQIFDLFLPYVDKLYITKIHHAFEGDTFFPEMDMTNWKEVFVEKGLTDEKNPYTYYYHVYEK-
General information:
TITO was launched using:
RESULT:
Template:
3JWK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92066 for 1164 contacts (-79.1/contact) +
2D Compatibility (PS) -16826 + (NN) -4863 + (LL) 128
1D Compatibility (HY) -18400 + (ID) 3700
Total energy: -135727.0 ( -116.60 by residue)
QMean score : 0.657
(partial model without unconserved sides chains):
PDB file :
Tito_3JWK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JWK-query.scw
PDB file :
Tito_Scwrl_3JWK.pdb
: