Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTLSFSDTYRLNNGIEMPRHGFGVYKLTDEARMRTALETAVDVGYRLFDTASFYHNEKELG----DFFASSGLKRDEFFVTTKMWNTEQGYDETLRAFEKSQKKLQLDQIDLYLVHWP-------------------KQDT-FFDTWRAVEKLYDEGLVRAIGVSNFEAHHLDRL--RTSANVLPVVDQLETHPHFPNHLLHRYLEELHIVHQAWSPLGRG----------GVLQEQILIDLAEKHGKSPAQIVLRWHLQNNISIIPKSETPSRIRENAAIYDFELSEADMRQVERLNTGERVSHAPDVMYVRSEI |
2PD9 Chain:A ((7-299)) | ----------LNNGAKMPILGLGTWK-SPPGQVTEAVKVAIDVGYRHIDCAHIYQNENEVGVAIQEKLREQVVKREELFIVSKLWCTYHEKGLVKGACQKTLSDLKLDYLDLYLIHWPTGFKPGKEFFPLDESGNVVPSDTNILDTWAAMEELVDEGLVKAIGISNFNHLQVEMILNKPGLKYKPAVNQIECHPYLTQEKLIQYCQSKGIVVTAYSPLGSPDRPWAKPEDPSLLEDPRIKAIAAKHNKTTAQVLIRFPMQRNLVVIPKSVTPERIAENFKVFDFELSSQDMTTLLSYNRNWRVC------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2PD9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -96302 for 2159 contacts (-44.6/contact) +
2D Compatibility (PS) -28099 + (NN) -13912 + (LL) 1892
1D Compatibility (HY) -24800 + (ID) 5300
Total energy: -166521.0 ( -77.13 by residue)
QMean score : 0.464
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