Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTNKRVAFILGGSGGIGKAVVQKLVEQNFAVAVHYAGNKAKAETLVENIVKSGGEAISVGGDVADEAQMIRAFDFIESQFGGIDVVINTAGIMKLSPIATLDMDDFDLIQRTNVRGTFVVSKQA--ALRVRNGGAIINFSTSVTRTSFPTYGAYVASKAGVESLTLILARELRGKDITVNAVAPGPTATPLFLTGKDDKTIDNLAKATPLERLGQPEDIAETVAFLAGPARWVNGQVIFT-NGGLA
4N5N Chain:B ((27-267))
---QRIAYVTGGMGGIGTAICQRLAKDGFRVVAGCGPNSPRREKWLEQQKALGFDFIASEGNVADWDSTKTAFDKVKSEVGEVDVLINNAGITRDVVFRKMTRADWDAVIDTNLTSLFNVTKQVIDGMADRGWGRIVNISSVNGQKGQFGQTNYSTAKAGLHGFTMALAQEVATKGVTVNTVSPGYIATDMVKAIRQD-VLDKIVATIPVKRLGLPEEIASICAWLSSEESGFSTGADFSLNGGL-
General information:
TITO was launched using:
RESULT:
Template:
4N5N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117486 for 1981 contacts (-59.3/contact) +
2D Compatibility (PS) -25948 + (NN) -13067 + (LL) 388
1D Compatibility (HY) -12400 + (ID) 4050
Total energy: -172563.0 ( -87.11 by residue)
QMean score : 0.470
(partial model without unconserved sides chains):
PDB file :
Tito_4N5N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4N5N-query.scw
PDB file :
Tito_Scwrl_4N5N.pdb
: