Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKQFAVDFIEASREEASAILEFLNTVTEETDFILHTVSNQLSLSEMETFIEN---------TLMTKNCICLIAKLKNKVIGLITIISQSDIE---IEHVGDLF-IAVQKDYWGYGIGHILMEEAIEWASDNDITRRLELSVQGRNERAIHLYQKFGFEIDGLQTRGIKRENGEFLDIYRMSKLID
1TIQ Chain:A ((2-170))
-----SVKMKKCSREDLQTLQQLSIETFNDT-FKEQ-----NSPENMKAYLESAFNTEQLEKELSNMSSQFFFIYFDHEIAGYVKVNIDDAQSEEMGAESLEIERIYIKNSFQKHGLGKHLLNKAIEIALER-NKKNIWLGVWEKNENAIAFYKKMGFVQTGAHSFYMG---DEEQTDLIMAKTLI
General information:
TITO was launched using:
RESULT:
Template:
1TIQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108291 for 1086 contacts (-99.7/contact) +
2D Compatibility (PS) -16693 + (NN) -2826 + (LL) 724
1D Compatibility (HY) -4000 + (ID) 1650
Total energy: -132736.0 ( -122.22 by residue)
QMean score : 0.454
(partial model without unconserved sides chains):
PDB file :
Tito_1TIQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TIQ-query.scw
PDB file :
Tito_Scwrl_1TIQ.pdb
: