Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRRIDPSKLELEERLVTVNRVAKVVKGGRRFRFAALVVVGDKNGHVGFGTGKAQEVPEAIRKAVEDAKKNLIEVPMVGTTIPHEIIGRFGAGNILLKPASEGTGVIAGGPVRAVLELAGVADILSKSLGSNTPINMIRATLQGLSELKRAEDVAKLRGKSVEELLG
4JV5 Chain:E ((1-148))
---------DFEEKMILIRRTARMQAGGRRFRFGALVVVGDRQGRVGLGFGKAPEVPLAVQKAGYYARRNMVEVPLQNGTIPHEIEVEFGASKIVLKPAAPGTGVIAGAVPRAILELAGVTDILTKELGSRNPINIAYATMEALRQLRTKADVERLR---------
General information:
TITO was launched using:
RESULT:
Template:
4JV5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71801 for 1162 contacts (-61.8/contact) +
2D Compatibility (PS) -16045 + (NN) -5017 + (LL) 1052
1D Compatibility (HY) -13600 + (ID) 4150
Total energy: -109561.0 ( -94.29 by residue)
QMean score : 0.596
(partial model without unconserved sides chains):
PDB file :
Tito_4JV5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JV5-query.scw
PDB file :
Tito_Scwrl_4JV5.pdb
: