Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMHTVTQTSLYGKDLLTLKDLSEEDINALLAEAGELKQNKI----QPIFHGKTLAMIFEKSSTRTRVSFEAGMAQLGGSALFLSQKDLQLGRGETVADTAKVLSGYVDAIMIRTFEHEKVEELAKEADIPVINGLTDKYHPCQALADLLTIKE-IKGK-LKGVKVAYIGDG-NNVAHSLMIGCAKMGCDISIASPKGYEVLDEAAEAAKTYAL--QSGSSVTLTDDPIEAVKDADVIYSDVFTSMGQEAEEQ-ERLAVFAPYQVNAALVS-HAKPDYTFLHCLPAHREE------------------EVTAEIIDGPNSAVFQQAENRLHVQKALLKAILYKGESSKNC
1DUV Chain:H ((1-333))------SGFYHKHFLKLLDFTPAELNSLLQLAAKLKADKKSGKEEAKLTGKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEYASVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQA--CWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDVWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCLPAFHDDQTTLGKKMAEEFGLHGGMEVTDEVFESAASIVFDQAENRMHTIKAVMVATLSK-------


General information:
TITO was launched using:
RESULT:

Template: 1DUV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain H - contact count / total energy / energy per contact / energy per residue : 1783 -157244 -88.19 -517.25
target 2D structure prediction score : 0.70
Monomeric hydrophicity matching model chain H : 0.82

3D Compatibility (PKB) : -88.19
2D Compatibility (Sec. Struct. Predict.) : 0.70
1D Compatibility (Hydrophobicity) : 0.82
QMean score : 0.469

(partial model without unconserved sides chains):
PDB file : Tito_1DUV.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1DUV-query.scw
PDB file : Tito_Scwrl_1DUV.pdb: