Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSASEFSRAELAAAFEKFEKTVARAAATRDWDCWVQHYTPDVEYIEHAAGIMRGRQRVRAWIQETMTTFPGSHMVAFPSLWSVIDESTGRIICELDNPMLDPGDGSVISATNISIITYAGNGQWCRQEDIYNPLRFLRAAMKWCRKAQELGTLDEDAARWMRRHGGP
1NWW Chain:A ((16-145))
--AAGAASTPDEKIVLEFMDA----LTSNDAAKLIEYFAEDTMYQNMPLPPAYGRDAVEQTLAGLFTVMSI---DAVETFHIGSSNG--LVYTERVDVLRALPTGKSYNLSILGVFQLT-EGKITGWRDYFDLREFEEAVDL-------------------------
General information:
TITO was launched using:
RESULT:
Template:
1NWW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45586 for 963 contacts (-47.3/contact) +
2D Compatibility (PS) -14130 + (NN) -7971 + (LL) 2132
1D Compatibility (HY) -1200 + (ID) 800
Total energy: -67555.0 ( -70.15 by residue)
QMean score : 0.316
(partial model without unconserved sides chains):
PDB file :
Tito_1NWW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NWW-query.scw
PDB file :
Tito_Scwrl_1NWW.pdb
: