Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSQNSQIQPQARYILPSFIEHSSFGVKESNPYNKLFEERIIFLGVQVDDASANDIMAQLLVLESLDPDRDITMYINSPGGGFTSLMAIYDTMQYVRADIQTVCLGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSLSGVIQGQFSDLEIQAAEIERMRTLMETTLARHTGKDAGVIRKDTDRDKILTAEEAKDYGIIDTVLEYRKLSAQTA
1YG6 Chain:C ((5-192))
-----------------MVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQP--LGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHR-------
General information:
TITO was launched using:
RESULT:
Template:
1YG6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110531 for 1344 contacts (-82.2/contact) +
2D Compatibility (PS) -21166 + (NN) -13620 + (LL) 1932
1D Compatibility (HY) -17600 + (ID) 4700
Total energy: -165685.0 ( -123.28 by residue)
QMean score : 0.565
(partial model without unconserved sides chains):
PDB file :
Tito_1YG6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YG6-query.scw
PDB file :
Tito_Scwrl_1YG6.pdb
: