Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMDLSQRLAGRVAVITGGGSGIGLAAGRRMRAEGATIVVGDVDVE-AGGAAADELS-----GLFVPTDVCDEDAVNGLFDGAAETYGRIDIAFNNAGISPPEDNLIENTELAAWQRVQDVNLKSVYLCCRAALRHMVLAG-KGSIVNTASFVAVMGSATSQISYTASKGGVLAMSRELGVQFARQGIRVNALCPGPVNTPLLQELFAKNPERAARRMVHVPLGRFAEPDEIAAAVAFLASDDASFITASTFLVDGGISSAYVTPL
1GCO Chain:E ((1-251))
---MYKDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFGKLDVMINNAGLENPVSS--HEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPLF-VHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFA-DPEQRADVESMIPMGYIGEPEEIAAVAAWLASSEASYVTGITLFADGGMT-------
General information:
TITO was launched using:
RESULT:
Template:
1GCO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -133714 for 2091 contacts (-63.9/contact) +
2D Compatibility (PS) -26576 + (NN) -9121 + (LL) 1392
1D Compatibility (HY) -15600 + (ID) 4400
Total energy: -188019.0 ( -89.92 by residue)
QMean score : 0.553
(partial model without unconserved sides chains):
PDB file :
Tito_1GCO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GCO-query.scw
PDB file :
Tito_Scwrl_1GCO.pdb
: