Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVEPDVETLDPPLPPVPDGAVMVTVKIARFNPDDPDAFAATGGWQSFRVP---CLPSDRLLNLLIYIKGYLDGTLTFRRSCAHGVCGSDAMRINGVNRLACKVLMRDLLPKKKGKSLTVTVEPIRGLPVEKDLVVDMEPFFDAYRAIKPYLIT--SGNPPTRERIQSPTDRARYDDTTKCILCACCTTSCPVFWHEG-SYFGPAAIVNAHRFIFDSRDEAAAERLDILNEVDGVWRCRTTFNCTESCPRGIEVTKAIQEVKRALMFTR
4YTP Chain:B ((48-270))
----------------------------------DPDKTGDKPHMQTYEIDLNNCGP--MVLDALIKIKNEIDSTLTFRRSCREGICGSCAMNINGGNTLACTRRIDTNLDK------VSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTEERLAKLQDPFSLYRCHTIMNCTGTCPKGLNPGKAIAEIKKMM----
General information:
TITO was launched using:
RESULT:
Template:
4YTP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -132762 for 1615 contacts (-82.2/contact) +
2D Compatibility (PS) -23027 + (NN) -10916 + (LL) 2012
1D Compatibility (HY) -19200 + (ID) 4650
Total energy: -188543.0 ( -116.74 by residue)
QMean score : 0.368
(partial model without unconserved sides chains):
PDB file :
Tito_4YTP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YTP-query.scw
PDB file :
Tito_Scwrl_4YTP.pdb
: