Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNQLPRVGLGTDVHPIEPGRPCWLVGLLFPSADGCAGHSDGDVAVHALCDAVLSAAGLGDIGEVFGVDDPRWQGVSGADMLRHVVVLITQHGYRVGNAVVQVIGNRPKIGWRRLEAQAVLSRLLNAP---VSVSATTTDGLGLTGRGEGLAAIATALVVSLR
3IKF Chain:B ((8-161))
-----RIGQGYDVHQLVPGRPLIIGGVTIPYERGLL---DADVLLHAITDALFGAAALGDIGRHFSDTDPRF--ADSRALLRECASRVAQAGFAIRNVDSTIIAQAPKLAPHIDAMRANIAADLDLPLDRVNVKAKTNEKLGYLGRGEGIEAQAAALVV---
General information:
TITO was launched using:
RESULT:
Template:
3IKF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139789 for 1221 contacts (-114.5/contact) +
2D Compatibility (PS) -16331 + (NN) -12353 + (LL) 324
1D Compatibility (HY) -8000 + (ID) 2950
Total energy: -179099.0 ( -146.68 by residue)
QMean score : 0.464
(partial model without unconserved sides chains):
PDB file :
Tito_3IKF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3IKF-query.scw
PDB file :
Tito_Scwrl_3IKF.pdb
: